About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59652384_59653259_F


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
59652384 - 59653259

Intron Length:
876

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAT|GTAAGTGAA

5'SS Class:
strong_major

3'SS Sequence:
ACTTCCGTTACAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTGAC

U12 Branch Point Sequence:
CTTTCCTGAACT

Flanking Amino Acid:
PNGKRKVRGDMRNPDPRSQL

Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
84.3
0.81
1
79.7
28.2

Major BPS
86.5
0.91
0.8
77.4
37.4

Major PPT
76.2
0.59
0.9
68.7
36.6

Minor 5ss
34.4
-1.8
3.3
44.6
43.6

Minor BPS
81.2
1.06
1.3
93.08
35.2

Associated Gene:

Gene:
WEE2

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

59649020 - 59661659
12640