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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59653309_59656165_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59653309 - 59656165
Intron Length:
2857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TATGACCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATGACCT
Flanking Amino Acid:
SQLKQDLQTKRCPLKESNMV
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.7
84.8
25.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
69.5
0.44
0.9
59.5
42.2
Minor 5ss
31.8
-2.1
3.3
42.9
44.7
Minor BPS
54.4
0.22
2
81.73
39.5

Associated Gene:

Gene:
WEE2
Ensembl Gene ID:
ENSAPLG00000013332
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013898
59649020 - 59661659
12640