About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59656339_59656964_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59656339 - 59656964
Intron Length:
626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
TGTGCTTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAA
U12 Branch Point Sequence:
CTGTCCCCAATA
Flanking Amino Acid:
SKRPLAGSSDEQLALREVYA
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1
66
40.1
Major BPS
50.5
0.01
1.3
60.6
37.4
Major PPT
74.7
0.56
0.9
66.4
40.7
Minor 5ss
32.1
-2
3.3
36.6
41.6
Minor BPS
50.5
0.01
1.9
64.16
42.6

Associated Gene:

Gene:
WEE2
Ensembl Gene ID:
ENSAPLG00000013332
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013898
59649020 - 59661659
12640