About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59658089_59658817_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59658089 - 59658817
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
CACTGTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
AGTTGCTAAACC
Flanking Amino Acid:
SGLVHLDIKPSNIFICHKLA
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
77
31.5
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
75.9
0.58
0.9
68.8
36.8
Minor 5ss
38.1
-1.3
3.3
50.7
41.2
Minor BPS
55.3
0.15
2.1
69.43
41.9

Associated Gene:

Gene:
WEE2
Ensembl Gene ID:
ENSAPLG00000013332
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013898
59649020 - 59661659
12640