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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59659330_59660236_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59659330 - 59660236
Intron Length:
907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
CTTTGTATAACA
Flanking Amino Acid:
RFLANEVLQEQYCHLPKADI
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
72.8
39.1
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
86
0.81
0.7
80.8
24.4
Minor 5ss
39.7
-1.2
3.4
55
49.2
Minor BPS
54.5
0.14
2.1
71.7
40.8

Associated Gene:

Gene:
WEE2
Ensembl Gene ID:
ENSAPLG00000013332
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013898
59649020 - 59661659
12640