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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59660408_59660490_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59660408 - 59660490
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCCTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAACCCTGAACT
Flanking Amino Acid:
LPDGFLELLKLMIHPDPAER
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.7
83.1
30.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.5
0.64
0.8
70
36.5
Minor 5ss
29.6
-2.3
2.6
32.5
42.4
Minor BPS
65.3
0.56
1.4
75.96
39.4

Associated Gene:

Gene:
WEE2
Ensembl Gene ID:
ENSAPLG00000013332
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013898
59649020 - 59661659
12640