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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59660634_59661505_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59660634 - 59661505
Intron Length:
872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATGTAG
U12 Branch Point Sequence:
TCTTCCTTTCCT
Flanking Amino Acid:
VEKCKTAMLERELKAARLAQ
Intron Amino Acid Position:
555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
73.4
43.3
Major BPS
42.5
-0.4
1.6
41.1
41.1
Major PPT
82.8
0.74
0.7
77.1
24.9
Minor 5ss
35.3
-1.7
3.8
55.3
48.9
Minor BPS
48
-0
3.6
84
43

Associated Gene:

Gene:
WEE2
Ensembl Gene ID:
ENSAPLG00000013332
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013898
59649020 - 59661659
12640