Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59664321_59664942_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

59664321 - 59664942

Intron Length:

622

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

TTATGTACCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTATGTACCT

Flanking Amino Acid:

RTGENEEAQGGDISQKTTWH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.4

0.7

83.9

30.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

69.5

0.44

0.9

67.5

38.8

Minor 5ss

38.4

-1.3

2.9

48.7

47.5

Minor BPS

49.2

0.02

2.4

80.33

41.9

Associated Gene:

Gene:

SSBP1

Ensembl Gene ID:

ENSAPLG00000013244

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013795

59662902 - 59667359

4458

ENSAPLT00000045574

59662902 - 59666073

3172