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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59665031_59665862_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59665031 - 59665862
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTGACTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
AAATTCTTGACT
Flanking Amino Acid:
RDVTYQYVKKGSRLYVEGKL
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.6
32.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
80.8
0.69
0.9
77
36.9
Minor 5ss
31.6
-2.1
3.1
31.7
42.6
Minor BPS
71.9
0.77
1.1
78.75
36.9

Associated Gene:

Gene:
SSBP1
Ensembl Gene ID:
ENSAPLG00000013244
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045574
59662902 - 59666073
3172
ENSAPLT00000013795
59662902 - 59667359
4458