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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59665952_59667315_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59665952 - 59667315
Intron Length:
1364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TAATCCTGAAGT
Flanking Amino Acid:
VRRQATTIVADNVIFLSDNV
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
90.8
0.92
0.7
89
27.5
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
64
0.52
1.8
79.45
41.9

Associated Gene:

Gene:
SSBP1
Ensembl Gene ID:
ENSAPLG00000013244
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013795
59662902 - 59667359
4458