About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5973018_6013545_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5973018 - 6013545
Intron Length:
40528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTTACTTACTC
Flanking Amino Acid:
SIENEIAVLRKIKHENIVAL
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
88.1
25.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
91.7
0.94
0.7
84.6
36
Minor 5ss
42
-0.9
2.8
55.1
35.9
Minor BPS
66.1
0.49
1.8
79.2
36.3

Associated Gene:

Gene:
CAMK1D
Ensembl Gene ID:
ENSAPLG00000005323
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046776
5962032 - 6093404
131373
ENSAPLT00000031574
5895631 - 6093404
197774
ENSAPLT00000005499
5892341 - 6093404
201064