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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59730765_59731404_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59730765 - 59731404
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
GTGACACTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCTGTGACA
Flanking Amino Acid:
SNSPLLTAPHKLQGTGPLIL
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.7
40.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
67.6
0.4
1
59
41.9
Minor 5ss
42
-0.9
2.8
53.9
43.5
Minor BPS
60.8
0.33
2
76.23
34.9

Associated Gene:

Gene:
CREB3L2
Ensembl Gene ID:
ENSAPLG00000012813
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013365
59673050 - 59744630
71581