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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59731552_59733247_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59731552 - 59733247
Intron Length:
1696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
TCTTTGCAAATA
Flanking Amino Acid:
KKIRRKIKNKISAQESRRKK
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
76.8
0.6
0.7
76.2
25.9
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
42.2
-0.6
2.4
58.62
42

Associated Gene:

Gene:
CREB3L2
Ensembl Gene ID:
ENSAPLG00000012813
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013365
59673050 - 59744630
71581