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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59734647_59741594_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59734647 - 59741594
Intron Length:
6948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
CATGCCTCATCT
Flanking Amino Acid:
KKVEVLENTNRTLLQQLQRL
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
85.3
0.8
0.8
76.7
37.4
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
49.8
0.06
2
69.27
47.2

Associated Gene:

Gene:
CREB3L2
Ensembl Gene ID:
ENSAPLG00000012813
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013365
59673050 - 59744630
71581