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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59742762_59743445_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59742762 - 59743445
Intron Length:
684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTATATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCCTTCTCACCT
Flanking Amino Acid:
SSPESYTDSIVRSRSLLIYE
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.6
30.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
76
0.59
1
70.5
39.3
Minor 5ss
33.1
-1.9
3.2
40.3
40.2
Minor BPS
52.9
0.17
1.9
71.07
46.1

Associated Gene:

Gene:
CREB3L2
Ensembl Gene ID:
ENSAPLG00000012813
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013365
59673050 - 59744630
71581