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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59743672_59744531_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59743672 - 59744531
Intron Length:
860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
TTTTTCCTACAG
Flanking Amino Acid:
KSVLLGLQQHRVNSEIEGNE
Intron Amino Acid Position:
691

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
93.2
0.97
0.6
88.6
21.1
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
49
-0.2
2.1
64.91
42.8

Associated Gene:

Gene:
CREB3L2
Ensembl Gene ID:
ENSAPLG00000012813
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013365
59673050 - 59744630
71581