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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59827968_59832318_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59827968 - 59832318
Intron Length:
4351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATAGTG
5'SS Class:
major
3'SS Sequence:
TTTCAATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATTTATTTATCT
Flanking Amino Acid:
LSTCYWLLPEKKAISRSGLQ
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
65.5
38.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
83.7
0.76
0.8
77.6
35.3
Minor 5ss
35.8
-1.6
3.5
47.7
42.3
Minor BPS
63.9
0.52
1.8
83.32
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012626
59827924 - 59874579
46656