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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59853977_59854521_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59853977 - 59854521
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TCCTTATTGACT
Flanking Amino Acid:
AISCSWCKLAFHNKVTCFML
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
72.8
38.8
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
81.7
0.71
0.8
73.4
37.2
Minor 5ss
32.5
-2
3.2
40.9
45.4
Minor BPS
60.9
0.42
1.6
75.47
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012626
59827924 - 59874579
46656