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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59860580_59861303_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59860580 - 59861303
Intron Length:
724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTTTACTAAAGT
Flanking Amino Acid:
KRKASKRGNEDNKGRPFVIK
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
80.9
0.7
0.8
80.4
31.6
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
59.5
0.38
2.1
84.76
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012626
59827924 - 59874579
46656