About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59862481_59864747_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59862481 - 59864747
Intron Length:
2267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
GTCCCTTGACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTTTTTTCACT
Flanking Amino Acid:
FDLSQEGPKDALELYRKVPN
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.3
72.3
40.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
64.6
0.33
1
58.1
42
Minor 5ss
43.8
-0.7
2.8
55.2
42.1
Minor BPS
66.4
0.6
1.7
83.79
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012626
59827924 - 59874579
46656