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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59868301_59868884_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59868301 - 59868884
Intron Length:
584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
ATTCCACTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
ATTCTGGTGACA
Flanking Amino Acid:
DLARTLNWGGGYTDEPVSKI
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
75.3
40.8
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
67.3
0.39
1
59.3
41.4
Minor 5ss
41.6
-0.9
2.9
51
45.2
Minor BPS
43
-0.5
2.5
61.3
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012626
59827924 - 59874579
46656