About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59870273_59873926_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59870273 - 59873926
Intron Length:
3654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TATCTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TATCTTTTCACA
Flanking Amino Acid:
HVTLEFHESREANPEKFNSR
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
84.4
0.77
0.8
79.7
32
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
56.4
0.2
1.7
69.28
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012626
59827924 - 59874579
46656