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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59916727_59919004_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59916727 - 59919004
Intron Length:
2278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTCTCTTCATT
Flanking Amino Acid:
LIVFTALTDLRISDRWNPAV
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
78.6
35.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
77
0.61
0.7
70.1
30.8
Minor 5ss
38.1
-1.3
3.1
52.9
44.3
Minor BPS
65.6
0.57
1.7
84.73
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019993
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036519
59915176 - 59964835
49660