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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59952688_59954277_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59952688 - 59954277
Intron Length:
1590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GTTTGTTTATTT
Flanking Amino Acid:
QAVIAGDLLKFIECCKKGAN
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
91.2
0.93
0.7
84.6
36
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
54.6
0.22
2
76.04
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019993
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036519
59915176 - 59964835
49660