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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59954399_59961687_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59954399 - 59961687
Intron Length:
7289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
ACATACTTGACT
Flanking Amino Acid:
GEIVKYILEHGPSELLDMTD
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
68.8
38
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
85.1
0.79
0.8
80.2
31.8
Minor 5ss
29.6
-2.3
2.8
36.4
40.6
Minor BPS
64.9
0.55
1.5
75.37
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019993
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036519
59915176 - 59964835
49660