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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_59961725_59963182_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59961725 - 59963182
Intron Length:
1458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TACTTTGGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
GTTTCTGTACTT
Flanking Amino Acid:
SELLDMTDSETGETALHKAA
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1.2
80.7
33.8
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
68.6
0.42
1
61.7
44.2
Minor 5ss
37.4
-1.4
2.6
43.1
36.9
Minor BPS
50.2
0.08
2.2
75.88
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019993
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036519
59915176 - 59964835
49660