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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_60002424_60043918_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
60002424 - 60043918
Intron Length:
41495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CTCTTTTTACTC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73.2
39.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
77.8
0.63
0.9
69.5
41.6
Minor 5ss
44.2
-0.6
2.9
59.3
45.5
Minor BPS
53.1
0.08
1.6
60.33
40.5

Associated Gene:

Gene:
PTN
Ensembl Gene ID:
ENSAPLG00000011788
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034223
60002377 - 60062411
60035