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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_60045739_60046800_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60045739 - 60046800
Intron Length:
1062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTACTCATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTACTTACTC
Flanking Amino Acid:
IPCNWKKQFGAECKYQFQAW
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.1
0.68
0.9
74.3
34.8
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
61.7
0.35
1.8
73.71
37.2

Associated Gene:

Gene:
PTN
Ensembl Gene ID:
ENSAPLG00000011788
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041201
60043857 - 60062411
18555
ENSAPLT00000034223
60002377 - 60062411
60035
ENSAPLT00000012270
60043857 - 60186483
142627