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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_601097_603724_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
601097 - 603724
Intron Length:
2628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTAACAT
U12 Branch Point Sequence:
TGCAGTGTAACA
Flanking Amino Acid:
RCLLVLHLEVRVHCFHYLIP
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
33.7
Major BPS
53.2
0.08
1.3
63.4
42.8
Major PPT
92.3
0.95
0.6
88.3
21.5
Minor 5ss
31
-2.2
3.4
42.5
44.5
Minor BPS
43.8
-0.4
2.3
56.06
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023384
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030366
524146 - 629157
105012