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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_603904_605676_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
603904 - 605676
Intron Length:
1773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGACAA
5'SS Class:
major
3'SS Sequence:
TTCCCCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
CATTGTTTGATT
Flanking Amino Acid:
QQHKFQYIFEGLGHLISCIL
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.3
67.8
39.3
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
78.3
0.64
0.7
72.8
25.3
Minor 5ss
26.7
-2.7
2.8
30.5
42.6
Minor BPS
55.1
0.24
1.8
70.92
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023384
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030366
524146 - 629157
105012