Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_60485479_60494005_R

Intron Information:

Intron Rank:

154657

Intron Class:

major

Intron Phase:

Intron Coordinates:

60485479 - 60494005

Intron Length:

8527

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATATCA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCACCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAC

U12 Branch Point Sequence:

TTTTTTTTCACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

73.3

31.6

Major BPS

90.1

0.99

0.7

91.6

20.3

Major PPT

83.9

0.76

0.8

77.9

35.5

Minor 5ss

38.3

-1.3

49.1

46.6

Minor BPS

69.1

0.58

1.7

81.25

33.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030786

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037401

60485169 - 60494579

9411