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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_60508073_60509015_R

Intron Information:

Intron Rank:
150030
Intron Class:
major
Intron Phase:
Intron Coordinates:
60508073 - 60509015
Intron Length:
943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTCC
5'SS Class:
strong_major
3'SS Sequence:
CCTCCTGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TGTTCCTTTCTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
77.7
31.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
77.9
0.63
0.8
71.7
32.7
Minor 5ss
41.5
-0.9
2.7
54.2
42.9
Minor BPS
46.2
-0.2
3.6
80.7
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028264
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024094
60495407 - 60509227
13821