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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6054872_6059255_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6054872 - 6059255
Intron Length:
4384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
CTTTGCTTATTC
Flanking Amino Acid:
RMGIVHRDLKPENLLYYSQD
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
64.9
40.7
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
87.2
0.84
0.6
81
31.1
Minor 5ss
37.1
-1.5
3.2
48.2
47.5
Minor BPS
55.6
0.16
2
69.6
42.7

Associated Gene:

Gene:
CAMK1D
Ensembl Gene ID:
ENSAPLG00000005323
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031574
5895631 - 6093404
197774
ENSAPLT00000005499
5892341 - 6093404
201064
ENSAPLT00000046776
5962032 - 6093404
131373