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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_60583785_60591800_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60583785 - 60591800
Intron Length:
8016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTTTACACTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATAACTTTAAAT
Flanking Amino Acid:
VGRQLFLHGRGEDVNRTLEG
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
80.7
33.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
63.4
0.3
1.1
62.2
38.6
Minor 5ss
35.6
-1.6
2.6
35.6
40.5
Minor BPS
66.3
0.59
1.4
77.7
38

Associated Gene:

Gene:
MTPN
Ensembl Gene ID:
ENSAPLG00000031045
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046822
60583746 - 60606184
22439