About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_605837_628919_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
605837 - 628919
Intron Length:
23083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
GCTTGCTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
GTTTTTTTGTTT
Flanking Amino Acid:
MSREADLDFARQYYEMLYNT
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
78.8
0.65
0.9
69
41.9
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
44.5
-0.3
3.4
74.33
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023384
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030366
524146 - 629157
105012