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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_60591915_60593054_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60591915 - 60593054
Intron Length:
1140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTACGTACA
5'SS Class:
major
3'SS Sequence:
TCTCAATTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTTCAAATAACT
Flanking Amino Acid:
FLLLKGADINAPDKHNITPL
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.1
73.8
36.6
Major BPS
77.3
0.68
1
81.5
27
Major PPT
79.7
0.67
0.9
72.6
36.3
Minor 5ss
37.4
-1.4
2.9
47.6
41.1
Minor BPS
52.5
0.16
2.1
81.52
38.8

Associated Gene:

Gene:
MTPN
Ensembl Gene ID:
ENSAPLG00000031045
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046822
60583746 - 60606184
22439
ENSAPLT00000034175
60565871 - 60606184
40314
ENSAPLT00000020782
60591587 - 60606184
14598