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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_60593139_60605097_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60593139 - 60605097
Intron Length:
11959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATAC
5'SS Class:
strong_major
3'SS Sequence:
AATGTCTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ACTTTATGAATT
Flanking Amino Acid:
VSCVKLLLSKGADKTVKGPD
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
77.3
26.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
77.1
0.61
0.9
69.4
40.9
Minor 5ss
32.8
-2
3
40.8
45.7
Minor BPS
54.4
0.21
1.7
71.98
39.1

Associated Gene:

Gene:
MTPN
Ensembl Gene ID:
ENSAPLG00000031045
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046822
60583746 - 60606184
22439
ENSAPLT00000034175
60565871 - 60606184
40314
ENSAPLT00000020782
60591587 - 60606184
14598