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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_60637760_60652113_F

Intron Information:

Intron Rank:
145384
Intron Class:
major
Intron Phase:
Intron Coordinates:
60637760 - 60652113
Intron Length:
14354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTATC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTCTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TAAACATGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
85.3
32.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
77.2
0.61
0.7
76.4
25.7
Minor 5ss
45.8
-0.4
2.6
63
41.5
Minor BPS
47.2
-0.2
1.8
58.77
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028377
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026051
60633951 - 60653035
19085