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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_60641757_60652113_F

Intron Information:

Intron Rank:
145388
Intron Class:
major
Intron Phase:
Intron Coordinates:
60641757 - 60652113
Intron Length:
10357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGCAG
5'SS Class:
major
3'SS Sequence:
TCCCTTCTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TAAACATGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
55
43.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
77.2
0.61
0.7
76.4
25.7
Minor 5ss
36.3
-1.6
3.2
46.8
48.6
Minor BPS
47.2
-0.2
1.8
58.77
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028377
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043114
60640546 - 60652121
11576