About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_60714290_60737401_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60714290 - 60737401
Intron Length:
23112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
AATTATTTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
CTTTCCTTAATT
Flanking Amino Acid:
HATVTYKWSRAMLYPAAQRL
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
79.6
0.67
0.9
70.2
44.6
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
88.9
1.3
0.9
95.75
31

Associated Gene:

Gene:
FAM180A
Ensembl Gene ID:
ENSAPLG00000003787
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003868
60714214 - 60738701
24488