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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_60737503_60738359_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60737503 - 60738359
Intron Length:
857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTCAGTAT
5'SS Class:
major
3'SS Sequence:
GATTTTGTACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GTGTTCTGATTT
Flanking Amino Acid:
SLEDVVLLYEFLLAELDIDK
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.3
0.24
1.2
61.2
39.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
66.3
0.37
1
59.5
45.7
Minor 5ss
33
-1.9
3.5
47.2
48.2
Minor BPS
51.3
0.12
1.7
69
42.3

Associated Gene:

Gene:
FAM180A
Ensembl Gene ID:
ENSAPLG00000003787
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003868
60714214 - 60738701
24488