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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_60743713_60747630_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60743713 - 60747630
Intron Length:
3918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTCTCCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
TTCTCCCTACAG
Flanking Amino Acid:
LPLPLLYPSSEASCAYVLIV
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
73.6
37
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
86.8
0.83
0.7
81
24.3
Minor 5ss
38
-1.4
2.7
44.7
42.7
Minor BPS
48.5
-0.2
2.1
61.25
46.2

Associated Gene:

Gene:
SLC13A4
Ensembl Gene ID:
ENSAPLG00000003795
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003930
60743614 - 60767285
23672