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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_60751244_60751883_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60751244 - 60751883
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTTGCC
5'SS Class:
major
3'SS Sequence:
TCCTTCATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TCTTCCTTCATT
Flanking Amino Acid:
STIIEENEPIDLSERHDQPS
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
67.8
35.6
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
82.5
0.73
0.8
76.5
30.7
Minor 5ss
40.1
-1.1
3
53.8
43.5
Minor BPS
73.6
0.83
1.7
87.41
38.9

Associated Gene:

Gene:
SLC13A4
Ensembl Gene ID:
ENSAPLG00000003795
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003930
60743614 - 60767285
23672