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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_60753493_60754110_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60753493 - 60754110
Intron Length:
618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTCA
5'SS Class:
major
3'SS Sequence:
TGCCTCCCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
CTAATCTAAAGG
Flanking Amino Acid:
TDFSSLMHSKSMNNVHMIAN
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
63.8
36.5
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
76.2
0.59
0.8
68.9
31.7
Minor 5ss
43.2
-0.7
3
57
47.2
Minor BPS
44.7
-0.5
2
47.89
45.5

Associated Gene:

Gene:
SLC13A4
Ensembl Gene ID:
ENSAPLG00000003795
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003930
60743614 - 60767285
23672