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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_60757275_60760136_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60757275 - 60760136
Intron Length:
2862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTATCTACCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
CTTTGTCTAATT
Flanking Amino Acid:
FWMHWLFLGCNFKETCSVSK
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.5
27.6
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
67.1
0.39
0.9
59.4
36.6
Minor 5ss
36.7
-1.5
2.8
41.8
38.8
Minor BPS
52.2
0.15
2.1
75.83
41.7

Associated Gene:

Gene:
SLC13A4
Ensembl Gene ID:
ENSAPLG00000003795
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003930
60743614 - 60767285
23672