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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_60760239_60760734_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60760239 - 60760734
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAACAG
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
GTTTGTTTATTT
Flanking Amino Acid:
QEEYKKLGNVSYPEMVTGFL
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
64.9
41
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
30.7
-2.2
3.1
38.3
46.6
Minor BPS
54.6
0.22
2
76.04
41.4

Associated Gene:

Gene:
SLC13A4
Ensembl Gene ID:
ENSAPLG00000003795
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003930
60743614 - 60767285
23672