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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_60760837_60762187_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60760837 - 60762187
Intron Length:
1351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATGCTAACT
Flanking Amino Acid:
FVPGWSSFFEKKGYRTDATV
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.4
26.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.3
0.64
0.7
77.2
30.8
Minor 5ss
33.7
-1.9
3.2
40.3
40.1
Minor BPS
50.7
0.1
2.4
81.07
40.5

Associated Gene:

Gene:
SLC13A4
Ensembl Gene ID:
ENSAPLG00000003795
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003930
60743614 - 60767285
23672