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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6077377_6079420_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6077377 - 6079420
Intron Length:
2044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTTTTTAATA
Flanking Amino Acid:
SPYWDDISESAKDFIRNLME
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
71.6
38.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
86.6
0.82
0.7
85.3
27.9
Minor 5ss
34
-1.8
2.9
40.9
39.4
Minor BPS
82.2
1.01
0.9
86.33
25.3

Associated Gene:

Gene:
CAMK1D
Ensembl Gene ID:
ENSAPLG00000005323
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046776
5962032 - 6093404
131373
ENSAPLT00000031574
5895631 - 6093404
197774
ENSAPLT00000005499
5892341 - 6093404
201064