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Intron Name: Anas_platyrhynchos_platyrhynchos_1_6079500_6089443_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6079500 - 6089443

Intron Length:

9944

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGCAAC

5'SS Class:

strong_major

3'SS Sequence:

CTGCCTGTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAA

U12 Branch Point Sequence:

ATGTCTTAAAAC

Flanking Amino Acid:

YTCEQAARHPWIAGDTALNK

Intron Amino Acid Position:

248

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

74.1

36.5

Major BPS

77.8

0.69

78.2

31.8

Major PPT

75.6

0.58

0.9

72.4

37.7

Minor 5ss

39.8

-1.1

2.9

48.9

41.6

Minor BPS

55.6

0.16

1.8

65.61

40.2

Associated Gene:

Gene:

CAMK1D

Ensembl Gene ID:

ENSAPLG00000005323

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046776

5962032 - 6093404

131373

ENSAPLT00000031574

5895631 - 6093404

197774

ENSAPLT00000005499

5892341 - 6093404

201064