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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6090140_6093282_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6090140 - 6093282
Intron Length:
3143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTAGG
5'SS Class:
major
3'SS Sequence:
GCTTTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ACACTTCTAACT
Flanking Amino Acid:
PLSDTTTRKDCMSPSTLCSF
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
63.5
42.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
80.1
0.68
0.8
77.7
31.1
Minor 5ss
32.3
-2
2.7
39.4
40.3
Minor BPS
49.6
0.05
1.6
64.92
39.5

Associated Gene:

Gene:
CAMK1D
Ensembl Gene ID:
ENSAPLG00000005323
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046776
5962032 - 6093404
131373
ENSAPLT00000031574
5895631 - 6093404
197774
ENSAPLT00000005499
5892341 - 6093404
201064